Hi dmalloch,
First, check that you're eligible to receive the transfer,
Guidance here:
Marriage Allowance
If you are not eligible, then your calculation will automatically reject the extra allowance.
If you are eligible, try submitting your return again.
You may have submitted your return before the transfer have been fully applied.
If you still cannot see the transfer in your calculation after this, contact us by webchat or phone here:
Self Assessment: general enquiries
And we can check the transfer for you.
Thank you.