Hi,
We apologise for the delay in replying.
You can register your limited company for CIS and this will not affect the other heads of duty, but you will be able to offset the `CIS suffered deductions against other taxes.
Similarly, you could register your personal UTR and use that and reclaim the CS suffered through Self Assessment. You can log onto Gov.uk and complete the online form in the CIS section.
Construction Industry Scheme (CIS)
Thank you.