Hi.
If you imported goods after your registration date but you were unable to use the correct EORI number as you had not received the new VAT number then you should have used a non VAT registered EORI number to import the goods and then recclaimed the VAT on the first return on the basis of the import evidence.
If you have used a different VAT registered EORI number then only on this VAT number would you be entitled to recover the import VAT incurred.
I would suggest contacting the shipping agent to complete a post import amendment whereby they can modify the import using your correct VAT registered EORI number.
For information about import amendments please contact our Customs contact Team :
Imports and exports: general enquiries